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Hi Pia,
Yes you can easily experiment with other winSec and incSec parameters.
In my experience, the winSec has a much bigger effect than the incSec, so I suggest starting with changing the size of your windows. However, keep in mind that the smaller you choose your winSec to be, the less datapoints will remain for your cross-correlations. In other words: Small windows will also imply short lagSec.
For the lagSec parameter, an empirically based way to determine this value, I suggest to look at the lagplot: The boundaries where your real synchrony crosses your pseudosynchrony may be taken as an approximation for a good lagSec parameter.
Best, Fabian